Qinze Yu(余沁泽)   Ph.D. student Department of Computer Science and Engineering CUHK Email: qinze979ATgmail.com ORCID

Biography

I am currently a Ph.D. candidate at the Department of Computer Science and Engineering, The Chinese University of Hong Kong (CUHK), supervised by Prof. Yu Li. Before that, I obtained my Bachelor's degree from UESTC in 2022, supervised by Prof. Xucheng Luo.

Research Interests

Deep Learning, Bioinformatics, NLP, AI for Healthcare.

Selected Awards

2019 National Scholarship of China

Publications (*equal contribution, ^#corresponding)

6. Deep generative design of RNA aptamers using structural predictions
   F.Wong, D.He, A.Krishnan, L.Hong, A.Z.Wang, J.Wang, Z.Hu, S.Omori, A.Li, J.Rao, Q.Yu, W.Jin, T.Zhang, K.Ilia, J.X.Chen, S.Zheng, I.King, Y.Li^#, J.J.Collins^#
   Nature Computational Science, 2024.[Full text]
7. Revisiting the Epitaxial Growth Mechanism of 2D TMDC Single Crystals
   C.Li, F.Zheng, J.Min, N.Yang, Y.Chang, H.Liu, Y.Zhang, P.Yang, Q.Yu, Y.Li, Z.Luo, A.Alijarb, K.Shih, J.Huang, L.Li^#, Y.Wan^#
   Advanced Materials, 2024.[Full text]
8. A machine learning-based risk score for prediction of infective endocarditis among patients with Staphylococcus aureus bacteraemia - The SABIER score
   C.Lai^#, E.Leung, Y.He, C-C.Cheung, O.Mui, Q.Yu, T.Li, A.Lee, Y.Li, C-Y.Lui
   The Journal of Infectious Diseases, 2024.[Full text]
9. Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
   J.Shen*, Q.Yu*, S.Chen*, Q.Tan, J.Li, Y.Li^#
   Nature Computational Science, 2023.[Full text]
10. Drug Synergistic Combinations Predictions via Large-Scale Pre-Training and Graph Structure Learning
    Z.Hu*, Q.Yu*, Y.Guo, T.Wang, I.King, X.Gao^#, L.Song^#, Y.Li^#
    RECOMB, 2023.[Full text]
11. Session-based Recommendation Via Contrastive Learning On Heterogeneous Graph
    H.Li, X.Luo^#, Q.Yu, H.Wang
    IEEE Bigdata, 2021.[Full text]

Intern & Work Experience

• Fall, 2024 Research Intern at RIKEN, Yokohama, Japan
  Advisor: Hon Chung-Chau and Ramzan Umarov
• Fall, 2021 Research Assistant at CUHK, Hong Kong, China
  Advisor: Yu Li
• Summer, 2021 Research Assistant at CUHK SZRI, Shenzhen, China
  Advisor: Yu Li

Teaching

TA - BMEG3105: Data analytics for personalized genomics and precision medicine, Fall 2022, Fall 2023, Fall 2024
TA - CSCI3320: Fundamentals of Machine Learning, Spring 2023
TA - ENGG2020: Digital Logic and Systems, Spring 2024